This function is an extension of plotPCA() that is optimized for automatic handling of differentially expressed genes, rather than requiring manual input of a gene vector or subset object.

plotDEGPCA(object, ...)

Arguments

object

Object.

...

Additional arguments.

Value

Plot.

Details

To adjust the annotation columns, modify the colData() of the counts argument, which must contain/extend a SummarizedExperiment.

Examples

class(plotDEGPCA)
#> [1] "nonstandardGenericFunction" #> attr(,"package") #> [1] "methods"