This function is an extension of plotPCA() that is optimized for automatic handling of differentially expressed genes, rather than requiring manual input of a gene vector or subset object.

plotDEGPCA(object, ...)

Plot.

Details

To adjust the annotation columns, modify the colData() of the counts argument, which must contain/extend a SummarizedExperiment.

Examples

class(plotDEGPCA)#> [1] "nonstandardGenericFunction"
#> attr(,"package")
#> [1] "methods"