bioverbs 0.2.0 (2019-07-23)
Bumped version to v0.2 release series to match update conventions defined in other basejump packages, in preparation of a new release candidate that may be suitable for Bioconductor submission.
plotCountsCorrelationHeatmap: New utility generics for comparing count correlation across multiple datasets.
- Renamed syntactic name functions, including "*Case" where appropriate.
upperCamelCase. The shorthand variants will remain exported in the syntactic package.
bioverbs 0.2.1 (2019-08-05)
tpm generics, which are defined in SingleCellExperiment.
clusterID generic in favor of
bioverbs 0.2.2 (2019-08-07)
markers to signature.
bioverbs 0.2.3 (2019-08-08)
calculateMetrics generic, which was previously defined as a standard function in bcbioSingleCell package. This verb is also applicable to the Chromium package, so we have migrated it here.
bioverbs 0.2.4 (2019-08-08)
Reworked some verbs to support changes in acidplots and pending bcbioSingleCell update.
bioverbs 0.2.5 (2019-08-12)
plotSums: Utility generic for plotting row and column sums of a matrix.
bioverbs 0.2.6 (2019-08-23)
nonzeroRowsAndCols: Generic that allows for easy subsetting of non-zero rows and columns from an object.
bioverbs 0.2.7 (2019-08-27)
- Updated R dependency to 3.6.
meltCounts in favor of simply using
melt. Note that
reshape2::melt is deprecated in favor of
tidyr::gather, so we’re not conflicting with any activate tidyverse verbs here.
- Migrated join, mutate, and select generics defined in transformer. Tightened up the required signature arguments here.
bioverbs 0.2.8 (2019-09-03)
DataFrame return consistency in documentation.
bioverbs 0.2.9 (2019-09-09)
- Migrated syntactic generics to the syntactic package. This includes:
flatFiles defunct in favor of
bioverbs 0.2.10 (2019-09-10)
contrastName<- assignment method generic.
resultsNames<- assignment method generic.